21st IEEE International Workshop on High Performance Computational Biology
In conjunction with the IEEE International Parallel and Distributed
Processing Symposium (IPDPS'22)
Virtual Workshop
May 30, 2022
10:00 - 13:50 EDT
All HiCOMB Attendees: To attend HiCOMB, please register at the IPDPS registration page. HiCOMB program will be delivered through the IPDPS virtual platform. Details will be sent to all registered attendees.
Please see www.hicomb.org for most recent version of the program and the abstracts of keynote and invited speakers. All times below are in Eastern Daylight Time.
| Plenary Session (10:00 - 10:55) | |
|---|---|
| 10:00-10:05 | Opening Remarks Can Alkan, Program Chair |
| 10:05-10:55 | Keynote address by Christina Boucher,
University of Florida Building scalable indexes that canbe efficiently queried Q&A |
| 10:55-11:00 | Break |
| Contributed Session A (11:00 - 12:35) | |
| 11:00-11:45 | Optimizing the Accuracy of Randomized Embedding for Sequence
Alignment. Yiqing Yan, Nimisha Chaturvedi, Raja Appuswamy On Using Consistency Consistently in Multiple Sequence Alignments. Mario Joăo Junior, Alexandre Sena, Vinod Rebello Algorithmic Improvement and GPU Acceleration of the GenASM Algorithm. Joel Lindegger, Damla Senol Cali, Mohammed Alser, Juan Gómez-Luna, Onur Mutlu High-throughput Pairwise Alignment with the Wavefront Algorithm using Processing-in-Memory. Safaa Diab, Amir Nassereldine, Mohammed Alser, Juan Gómez Luna, Onur Mutlu, Izzat El Hajj Sequre: A High-Performance Framework for Rapid Development of Secure Bioinformatics Pipelines. Haris Smajlović, Ariya Shajii, Bonnie Berger, Hyunghoon Cho, Ibrahim Numanagić Scalable and Extensible Robinson-Foulds for Comparative Phylogenetics. Alvin Chon, Paweł Górecki, Oliver Eulenstein, Xiaoqiu Huang, Ali Jannesari |
| 11:45-12:00 | Q & A and discussion
|
| 12:00-12:35 | Invited Talk by Yatish
Turakhia, University of California, San Diego Pandemic-scale Phylogenetics Q&A |
| 12:35-12:40 | Break |
| Contributed Session B (12:40 - 13:50) | |
| 12:40-13:50 | Accelerating Deep Learning based Identification of
Chromatin Accessibility from noisy ATAC-seq Data. Narendra Chaudhary, Sanchit Misra, Dhiraj Kalamkar, Alexander Heinecke, Evangelos Georganas, Barukh Ziv, Menachem Adelman, Bharat Kaul Graph Convolutional Neural Networks for Alzheimer's Classification with Transfer Learning and HPC Methods. Anoop Kumar, Vibha Balaji, Chandrashekar MA, Ambedkar Dukkipati, Sathish Vadhiyar Accelerated LD-based selective sweep detection using GPUs and FPGAs. Reinout Corts, Niek Sterenborg, Nikolaos Alachiotis Proteome-scale Deployment of Protein Structure Prediction Workflows on the Summit Supercomputer. Mu Gao, Mark Coletti, Russell Davidson, Ryan Prout, Subil Abraham, Benjamin Hernandez, Ada Sedova Reproducibility Assessment of Bioinformatics Tools. Pelin Icer Baykal, Niko Beerenwinkel, Serghei Mangul TAMPA: interpretable analysis and visualization of metagenomics-based taxon abundance profiles. Varuni Sarwal, Serghei Mangul, David Koslicki |
| 13:50 | Adjourn |